PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016453921.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family M-type_MADS
Protein Properties Length: 153aa    MW: 17403 Da    PI: 9.8485
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016453921.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF61.59.6e-201659245
                    ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS
          SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45
                    +ienk nrqv+fskRrng++KKA+EL v+++aev +i+f   +k
  XP_016453921.1 16 KIENKNNRQVSFSKRRNGVFKKANELVVMTGAEVGIIVFPLGNK 59
                    79************************************966555 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006622.455767IPR002100Transcription factor, MADS-box
SMARTSM004324.7E-25766IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.22E-22876IPR002100Transcription factor, MADS-box
PRINTSPR004046.1E-16929IPR002100Transcription factor, MADS-box
PfamPF003191.3E-211663IPR002100Transcription factor, MADS-box
PRINTSPR004046.1E-162944IPR002100Transcription factor, MADS-box
PRINTSPR004046.1E-164465IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 153 aa     Download sequence    Send to blast
MSTRLIKGRK SVCLAKIENK NNRQVSFSKR RNGVFKKANE LVVMTGAEVG IIVFPLGNKP  60
YSFGHPNVNE TIDKYVCEER PPSLSSPGID DNKLKEKNKN LENQQEWFRG PIEKMNYTEA  120
SILKEGLEDL LLKVKNYGTE CGYGYETGKW KAK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016453921.11e-110PREDICTED: agamous-like MADS-box protein AGL61
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA3829435
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24840.12e-23AGAMOUS-like 61